PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495114.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 229aa    MW: 25609.4 Da    PI: 5.2274
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.2e-3991091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++l
  XP_004495114.1   9 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPLTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQL 103
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+lke+
  XP_004495114.1 104 AYLKEQ 109
                     **9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0268110IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-369107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSGSVSGSPC GACKFLRRKC IRGCVFAPYF CHEQGATHFA AIHKVFGASN VSKLLAHLPL  60
TDRCEAAVTI SYEAQARLQD PIYGCVSHIF ALQQQVVNLQ TQLAYLKEQA EAQTCLLNNE  120
KSTSLNLPQQ DLQGWFQMQN SNNYQLGQEF LTNNLSNISS ATQYYGNNTL MNVDPTRNYE  180
NSGIIEENSS FSSFEESTSN SMSYDMQTNR RTWGFDEVED LHSVAFGYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150419e-92AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495114.11e-173PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J72e-67LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A072VL561e-125A0A072VL56_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA13G18210.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-57lateral organ boundaries-domain 29